Luiz M. R. Gadelha Jr.

Senior Technologist
CENAPAD-RJ - National Center for High Performance Computing at Rio de Janeiro
DEXL - Extreme Data Lab Research Group
LNCC - National Laboratory for Scientific Computing, Brazil

My publications are also listed at DBLP, Google Scholar, Mendeley and ResearchGate.

  • 2018
    • Mondelli, M. L., Gadelha, L., Ziviani, A. (2018). O Que os Países Escutam: Analisando a Rede de Gêneros Musicais ao Redor do Mundo. VII Brazilian Workshop on Social Network Analysis and Mining (BraSNAM). [PDF]
    • de Siracusa, P, Gadelha, L. M. R., Ziviani, A. (2018). On the Social Structure behind Biological Collections. bioRxiv, 341297. (Preprint) [DOI: 10.1101/341297] [PDF]
    • Chame, M., Barbosa, H. J. C., Gadelha, L. M. R., Augusto, D. A., Krempser, E., Abdalla, L. (2018). SISS-Geo: Leveraging Citizen Science to Monitor Wildlife Health Risks in Brazil. bioRxiv, 286740. (Preprint) [DOI: 10.1101/286740] [PDF]
    • Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza R. Vasconcelos, Kary Ocaña, Luiz M. R. Gadelha Jr. BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. arXiv:1801.03915, 2018. (Preprint) [PDF]
  • 2017
    • Sánchez-Tapia, A., de Siqueira, M., Lima, R., Barros, F., Gall, G., Gadelha, L., and da Silva, L. Model-R: A Framework for Scalable and Reproducible Ecological Niche Modeling. In High Performance Computing - Fourth Latin American Conference, CARLA 2017. Communications in Computer and Information Science, vol. 796: 218-232. Springer, 2017. [DOI: 10.1007/978-3-319-73353-1_15] [PDF]
    • Costa, R. L., Gadelha, L., Ribeiro-Alves, M., Porto, F. (2017). GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis. PeerJ, 5, e3509. [DOI: 10.7717/peerj.3509] [PDF]
  • 2016
    • Mondelli, M., Tonelli, M., Ocaña, K., Vasconcelos, A., Gadelha, L. (2016). HPSW-Prof: A Provenance-Based Framework for Profiling High Performance Scientific Workflows. Demonstration Track, Proc. of Satellite Events of the 31st Brazilian Symposium on Databases (SBBD 2016), p. 117-122. SBC, 2016. (Demonstration Track Best Paper Award) [PDF]
    • Mondelli, M., Galheigo, M., Medeiros, V., Bastos, B., Gomes, A., Mattoso, M., Vasconcelos, A., Gadelha, L. (2016). Integrating Scientific Workflows with Scientific Gateways: A Bioinformatics Experiment in the Brazilian National High-Performance Computing Network. X Brazilian e-Science Workshop. Anais do XXXVI Congresso da Sociedade Brasileira de Computação, p. 277-284. SBC, 2016. [PDF]
  • 2015
    • Mondelli, M. L., Vilasbôas, F., Ocaña, K., Mattoso, M., Vasconcelos, A. T., Gadelha, L. (2015). Provenance-based Profiling of Swift Parallel and Distributed Scientific Workflows. In Proceedings X-Meeting 2015 (p. 176). (Poster) [PDF]
    • Mondelli, M. L., Torreño, O., Ocaña, K. A. C. S., Mattoso, M., Wilde, M., Vasconcellos, A. T., Trelles, O., Gadelha, L. M. R. (2015). SwiftGECKO: a provenance-enabled parallel comparative genomics workflow. In Proceedings X-Meeting 2015 (p. 268). (Abstract) [PDF]
    • P. Meirelles, L. Gadelha, R. Francini-Filho, R. Leão, G. Amado-Filho, A. Bastos, ..., F. Thompson. (2015). BaMBa: towards the integrated management of Brazilian marine environmental data. Database: The Journal of Biological Databases and Curation, 2015. [DOI: 10.1093/database/bav088] [PDF]
    • M. Chame, H. J. C. Barbosa, L. Gadelha, D. A. Augusto, E. Krempser, L. Abdalla. Sistema de Informação em Saúde Silvestre - SISS-Geo. Grandes Desafios da Computação no Brasil - Relatos do 3º Seminário, p. 72-87. SBC, 2015. (Health Track Best Paper Award) [PDF]
    • P. Meirelles, G. Amado-Filho, G. Pereira-Filho, H. Pinheiro, R. de Moura, J. Joyeux, E. Mazzei, A. Bastos, R. Edwards, E. Dinsdale, R. Paranhos, E. Santos, T. Iida, K. Gotoh, S. Nakamura, T. Sawabe, C. Rezende, L. Gadelha, R. Francini-Filho, C. Thompson, F. Thompson. Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data. PLOS ONE, 10(6), e0130084, 2015. [DOI: 10.1371/journal.pone.0130084] [PDF]
  • 2014
    • R. Zorrilla, M. Poltosi, L. Gadelha, F. Porto, A. Moura, A. Dalto, H. P. Lavrado, Y. Valentin, M. Tenório, E. Xavier. Conceptual View Representation of the Brazilian Information System on Antarctic Environmental Research. Data Science Journal, 13:PDA20-PDA26. CODATA, 2014. [DOI: 10.2481/dsj.IFPDA-04] [PDF]
    • L. Gadelha, P. Guimarães, A. Moura, D. Drucker, E. Dalcin, G. Gall, J. Tavares, D. Palazzi, M. Poltosi, F. Porto, W. Leo. SiBBr: Uma Infraestrutura para Coleta, Integração e Análise de Dados sobre a Biodiversidade Brasileira. VIII Brazilian e-Science Workshop. Anais do XXXIV Congresso da Sociedade Brasileira de Computação, p. 345-352. SBC, 2014. [PDF]
    • L. Gadelha, M. Mattoso. Applying Provenance to Protect Attribution in Distributed Computational Scientific Experiments. Provenance and Annotation of Data and Processes - The Fifth Provenance and Annotation Workshop (IPAW 2014), Cologne, Germany. Lecture Notes in Computer Science, vol. 8628, Springer, 2014. [DOI: 10.1007/978-3-319-16462-5_11] [PDF]
  • 2013
    • R. Zorilla, M. Poltosi, L. Gadelha, F. Porto, A. Moura. Design and Implementation of the Brazilian Information System on Antarctic Environmental Research. Proceedings of the International Forum on Polar Data Activities in Global Data Systems, Tokyo, Japan, p. 17-18. WDS International Programme Office, 2013. [PDF]
    • L. Gadelha, M. Wilde, M. Mattoso, I. Foster. Provenance Traces of the Swift Parallel Scripting System. Proceedings of the Joint EDBT/ICDT 2013 Workshops (EDBT'13), Genoa, Italy, p. 325-326. ACM, 2013. [DOI: 10.1145/2457317.2457374] [PDF]
  • 2012
    • L. Gadelha, S. Stanzani, P. Corrêa; E. Dalcin, C. Gomes, L. Sato, M. Siqueira. Scalable and Provenance-Enabled Scientific Workflows for Predicting Distribution of Species. Proc. 8th International Conference on Ecological Informatics (ISEI 2012), p. 222-224. Brasília, 2012.
    • L. Gadelha. Gerência de Proveniência em Workflows Científicos Paralelos e Distribuídos. D.Sc. Thesis, Computer and Systems Engineering Program, COPPE, Federal University of Rio de Janeiro, 2012 (Advisor: Professor Marta Mattoso). [PDF]
    • L. Gadelha, M. Wilde, M. Mattoso, I. Foster. MTCProv: A Practical provenance query framework for many-task scientific computing. Distributed and Parallel Databases, 30(5-6):351-370. Springer, 2012. [DOI: 10.1007/s10619-012-7104-4] [PDF]
  • 2011
    • L. Gadelha, M. Wilde, M. Mattoso, I. Foster. Exploring Provenance in High Performance Scientific Computing. Proceedings of the 1st Workshop on High-Performance Computing meets Databases (HPCDB 2011), p. 17-20. Co-located with Supercomputing 2011, Seattle, USA. ACM, 2011. [DOI: 10.1145/2125636.2125643] [PDF]
    • L. Gadelha, M. Mattoso, M. Wilde, I. Foster. Provenance Query Patterns for Many-Task Scientific Computing. 3rd USENIX Workshop on the Theory and Practice of Provenance (TaPP 2011), Heraklion, Greece. In cooperation with ACM SIGMOD/PODS Conference 2011. USENIX, 2011. [PDF]
    • L. Gadelha, B. Clifford, M. Mattoso, M. Wilde, and I. Foster. Provenance Management in Swift. Future Generation Computer Systems, 27(6):775-780. Elsevier, 2011. [DOI: 10.1016/j.future.2010.05.003] [PDF]
  • 2010
    • L. Gadelha, M. Mattoso, M. Wilde and I. Foster. Towards a Threat Model for Provenance in e-Science. Provenance and Annotation of Data and Processes - The Third Provenance and Annotation Workshop (IPAW 2010), Troy, USA, p. 277-279. Lecture Notes in Computer Science, vol. 6378, Springer, 2010. [DOI: 10.1007/978-3-642-17819-1_32]
    • L. Gadelha, B. Clifford, M. Mattoso, M. Wilde, and I. Foster. Provenance Management in Swift with Implementation Details. Technical Report ANL/MCS-TM-311, Argonne National Laboratory, 2010. [PDF]
  • 2008
    • L. Gadelha, M. Mattoso. Kairos: An Architecture for Securing Authorship and Temporal Information of Provenance Data in Grid-Enabled Workflow Management Systems. 3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES 2008), Indianapolis, USA. Proceedings of the 4th IEEE International Conference on e-Science (e-Science 2008), p. 597-602. IEEE Computer Society, 2008. [DOI: 10.1109/eScience.2008.161]
    • S. da Cruz, F. da Silva, L. Gadelha, M. Cavalcanti, M. Campos, M. Mattoso. A Lightweight Middleware Monitor for Distributed Scientific Workflows. 3rd International Workshop on Workflow Systems in e-Science (WSES 08), Lyon, France. Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), p. 693-698. IEEE Computer Society, 2008. [DOI: 10.1109/CCGRID.2008.89]
    • L. Gadelha, F. Licht, V. Medeiros and B. Schulze. Práticas e Políticas de Certificação para Grades. Anais VI Workshop de Computação em Grid e Aplicações (WCGA 2008), Rio de Janeiro, p. 157-158. SBC, 2008. [PDF]
  • 2007
    • L. Gadelha and B. Schulze. On the Management of Grid Credentials. Proceedings of the 5th International Workshop on Middleware for Grid Computing (MGC 2007): held at the ACM/IFIP/USENIX 8th International Middleware Conference (Middleware 2007), Newport Beach, USA. ACM, 2007. [DOI: 10.1145/1376849.1376859] [PDF]
  • 2006
    • L. Gadelha. Specification of a MyProxy Plugin for Mozilla. Proc. IV Workshop de Computação em Grid e Aplicações (WCGA 2006), p. 155-156, Curitiba. SBC, 2006. [PDF]
  • 2001
    • L. Gadelha and M. Ayala-Rincón. An Efficient Strategy for Word-Cycle Completion in Finitely Presented Groups. Proc. XXI International Conference of the Chilean Computer Science Society (SCCC 2001), Punta Arenas, Chile, p. 80-85. IEEE Computer Society, 2001. [DOI: 10.1109/SCCC.2001.972635]
  • 2000
    • L. Gadelha. Aplicações de Técnicas de Reescrita ao Problema da Palavra de Grupos. M.Sc. Dissertation, Department of Computer Science, University of Brasília, 2000 (Advisor: Professor Mauricio Ayala-Rincón). [PDF]
  • 1998
    • L. Gadelha and M. Ayala-Rincón. Some Applications of (Semi-)Decision Algorithms for Presburger Arithmetic in Automated Deduction based on Rewriting Techniques. La Revista de La Sociedad Chilena de Ciencia de La Computacion, v. 2, n. 1, p. 14-23, 1998. [Postscript]
  • 1997
    • L. Gadelha and M. Ayala-Rincón. Applications of Decision Algorithms for Presburger Arithmetic in Rewrite Automated Deduction. Proc. XXIII Latin American Conference on Informatics (CLEI 1997), Valparaiso, Chile, 1997. [PDF]
    • L. Gadelha and M. Ayala-Rincón. Métodos de Decisão para a Aritmética de Presburger na Dedução Automática com Técnicas de Reescrita. Anais do XX Congresso Nacional de Matemática Aplicada e Computacional (CNMAC 1997), Gramado. SBMAC, 1997. [PDF]
  • 1996
    • L. Gadelha and M. Ayala-Rincón. Aplicação de Métodos de Programação Linear Inteira para Decisão na Teoria da Aritmética de Presburger. Anais do XIX Congresso Nacional de Matemática Aplicada e Computacional (CNMAC 1996), Goiânia. SBMAC, 1996.
Address:
Laboratório Nacional de Computação Científica
Av. Getúlio Vargas, 333, Sala 2A-07 - Quitandinha
25651-075 Petrópolis, RJ - Brazil
Phone:
+55 (24) 2233-6296
E-mail:
  • Brazilian Biodiversity Information System (SiBBr)
  • Provenance Database for the Swift Parallel Scripting System (MTCProv)
  • Programa de Pós-Graduação em Modelagem Computacional, LNCC:
    • GA-009: Banco de Dados. [2016/P3]
    • GB-500: Introdução a Workflows Científicos e suas Aplicações. [2015/P3] [2016/RABICO] [2017/RABICO] [2018/P2]
  • Programa de Verão do LNCC:
    • Introdução a Workflows Científicos Paralelos e Distribuídos (2012). [Home page | Slides]
    • Introdução às Infra-estruturas de Chaves Públicas: Certificados Digitais e suas Aplicações (2007). [Slides]
  • Escola Superior de Redes, RNP:
    • Segurança de Redes e Sistemas. [09/2006] [10/2006] [04/2007]

Personal Information

Name: Luiz Manoel Rocha Gadelha Júnior

Areas of Expertise

High-performance computing, scientific workflows, provenance, scientific databases, public-key infrastructures

Education

D.Sc. in Computer and Systems Engineering
UFRJ - Federal University of Rio de Janeiro, 2012
Thesis title: Provenance Management in Parallel and Distributed Scientific Workflows
Advisor: Professor Marta Mattoso

D.Sc. Internship
Argonne National Laboratory & University of Chicago, March 2010 - February 2011
Title: A Practical Provenance Query Framework for Many-Task Scientific Computing
Advisor: Professor Ian Foster

M.Sc. in Computer Science
UnB - University of Brasília, 2000
Dissertation title: Applications of Rewriting Techniques to the Word Problem in Group Theory
Advisor: Professor Mauricio Ayala-Rincón

B.Sc. in Mathematics
UnB - University of Brasília, 1997

Professional Experience

LNCC - National Laboratory for Scientific Computing, 2004-
Intermediate Technologist
Petrópolis, Rio de Janeiro, Brazil

Certisign Certificadora Digital S.A. (Verisign Trust Network), 2001-2004
System Administrator
Rio de Janeiro, Rio de Janeiro, Brazil

Unioeste - State University of Western Paraná, 2000-2001
Auxiliar Professor
Cascavel, Paraná, Brazil

Selected Publications

Raquel Costa, Luiz Gadelha, Marcelo Ribeiro-Alves, Fabio Porto. GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis. PeerJ, 5: e3509. 2017.

Pedro Meirelles, Luiz Gadelha, et al. BaMBa: towards the integrated management of Brazilian marine environmental data. Database: The Journal of Biological Databases and Curation, 2015: 1-10. Oxford University Press, 2015.

Luiz Gadelha, Marta Mattoso. Applying Provenance to Protect Attribution in Distributed Computational Scientific Experiments. Provenance and Annotation of Data and Processes - The Fifth Provenance and Annotation Workshop (IPAW 2014), Cologne, Germany. Lecture Notes in Computer Science, vol. 8628, Springer, 2014.

Luiz Gadelha, Michael Wilde, Marta Mattoso, Ian Foster. MTCProv: a practical provenance query framework for many-task scientific computing. Distributed and Parallel Databases, 30(5-6):351-370. Springer, 2012.

Luiz Gadelha, Ben Clifford, Marta Mattoso, Michael Wilde, Ian Foster. Provenance Management in Swift. Future Generation Computer Systems, 27(6):775-780. Elsevier, 2011.

Awards and Certifications

Sistema de Informação em Saúde Silvestre - SISS-Geo, best article in the "Health" category in the event 3º Seminário Grandes Desafios da Computação no Brasil, 2014.

Sun Certified System Administrator for the Solaris 8 Operating System, Sun Microsystems, 2003

Certificate of Proficiency in English, University of Michigan, 1999